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plink-software

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plink-software [2015/11/24 13:28] – joguyaplink-software [2019/12/09 08:55] – aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 1.9 +  * Version: 2.00-alpha (Nov 28, 2019) 
-  * Added: November, 2015 +  * Added: October, 2011 
-  * Updated: October, 2011 +  * Updated: December, 2019 
-  * Link: https://www.cog-genomics.org/plink2/+  * Link: https://www.cog-genomics.org/plink/2.0/
  
 ===== Usage ===== ===== Usage =====
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 <code>$ module avail plink</code> <code>$ module avail plink</code>
  
-Load and run plink: +Load one version into your environment and run it: 
-<code>$ module load plink/1.9 +<code>$ module load plink/2.00-alpha 
-$ plink</code>+$ plink2</code>
  
 ===== Installation ====== ===== Installation ======
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 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://www.cog-genomics.org/static/bin/plink151123/plink_linux_x86_64.zip +$ wget http://s3.amazonaws.com/plink2-assets/plink2_linux_x86_64_20191128.zip 
-$ mkdir plink-1.90 +$ sudo mkdir /export/apps/plink/2.00-alpha 
-$ cd plink-1.90 +$ sudo cp plink2 /export/apps/plink/2.00-alpha</code> 
-$ unzip ../plink_linux_x86_64.zip + 
-$ sudo mkdir /export/apps/plink/1.9 +The AVX2 build only runs on **one** of our compute nodes because the rest are too old. We need to use the less-optimized 64-bit builds. :(
-$ sudo cp . /export/apps/plink/1.9 +
-</code>+
plink-software.txt · Last modified: 2019/12/09 09:10 by aorth