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pilon-software [2018/11/18 06:50]
aorth created
pilon-software [2019/02/15 09:14] (current)
aorth
Line 5: Line 5:
 ===== Information ===== ===== Information =====
  
-  * Version: 1.2.2+  * Version: 1.23
   * Added: November, 2018   * Added: November, 2018
-  * Link: +  * Updated: February, 2019 
 +  * Link: https://github.com/broadinstitute/pilon/wiki
  
 ===== Usage ===== ===== Usage =====
  
 Pilon is distributed as a Java JAR file. You need to run it like this: Pilon is distributed as a Java JAR file. You need to run it like this:
-<code>$ java -Xmx16G -jar /export/apps/pilon/1.2.2/pilon-1.22.jar</code>+<code>$ java -Xmx8G -jar /export/apps/pilon/1.23/pilon-1.23.jar</code>
  
-The [[https://github.com/broadinstitute/pilon/wiki/Requirements-&-Usage|documentation recommends]] using a minimum of 8GB of memory, or 16GB if possible.+The [[https://github.com/broadinstitute/pilon/wiki/Requirements-&-Usage|documentation recommends]] using a minimum of 8GB of memory, or 16GB if possible. As a rule of thumb, try to allocate 1GB of memory per megabase of input genome to be processed.
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ sudo mkdir -p /export/apps/pilon/1.2.2 +<code>$ sudo mkdir -p /export/apps/pilon/1.23 
-$ sudo wget https://github.com/broadinstitute/pilon/releases/download/v1.22/pilon-1.22.jar -O /export/apps/pilon/1.2.2/pilon-1.22.jar</code>+$ sudo wget https://github.com/broadinstitute/pilon/releases/download/v1.23/pilon-1.23.jar -O /export/apps/pilon/1.23/pilon-1.23.jar</code>
pilon-software.1542523843.txt.gz · Last modified: 2018/11/18 06:50 by aorth