picrust-software
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picrust-software [2015/01/08 17:23] – created joguya | picrust-software [2015/01/08 17:33] (current) – joguya | ||
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====== PICRUSt ====== | ====== PICRUSt ====== | ||
- | PICRUSt | + | PICRUSt is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. |
==== v1.0.0 ==== | ==== v1.0.0 ==== | ||
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python setup.py install | python setup.py install | ||
- | - Download | + | - Download hdf5 - already compiled, add lib dir to LD_LIBRARY_PATH. Create module for later use. |
wget " | wget " | ||
cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared | cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared | ||
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sudo chown -R joguya: | sudo chown -R joguya: | ||
cp -r * / | cp -r * / | ||
- | sudo chown -R joguya:joguya | + | sudo chown -R root:root / |
- Download & build h5py | - Download & build h5py |
picrust-software.1420737806.txt.gz · Last modified: 2015/01/08 17:23 by joguya