User Tools

Site Tools


picrust-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Next revision
Previous revision
picrust-software [2015/01/08 17:23] – created joguyapicrust-software [2015/01/08 17:33] (current) joguya
Line 1: Line 1:
 ====== PICRUSt ====== ====== PICRUSt ======
-PICRUSt (pronounced “pie crust”) is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes.+PICRUSt is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes.
  
 ==== v1.0.0 ==== ==== v1.0.0 ====
Line 88: Line 88:
 python setup.py install python setup.py install
  
-- Download & build hdf5 - already compiled, add lib dir to LD_LIBRARY_PATH. Create module for later use.+- Download hdf5 - already compiled, add lib dir to LD_LIBRARY_PATH. Create module for later use.
 wget "http://www.hdfgroup.org/ftp/HDF5/current/bin/linux-centos6-x86_64-gcc447/hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared.tar.gz" - O hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared.tar.gz wget "http://www.hdfgroup.org/ftp/HDF5/current/bin/linux-centos6-x86_64-gcc447/hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared.tar.gz" - O hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared.tar.gz
 cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared
Line 95: Line 95:
 sudo chown -R joguya:joguya /export/apps/hdf5/1.8.14/ sudo chown -R joguya:joguya /export/apps/hdf5/1.8.14/
 cp -r * /export/apps/hdf5/1.8.14/ cp -r * /export/apps/hdf5/1.8.14/
-sudo chown -R joguya:joguya /export/apps/hdf5/1.8.14/+sudo chown -R root:root /export/apps/hdf5/1.8.14/
  
 - Download & build h5py - Download & build h5py
picrust-software.1420737806.txt.gz · Last modified: 2015/01/08 17:23 by joguya