picrust-software
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| picrust-software [2015/01/08 17:23] – created joguya | picrust-software [2015/01/08 17:33] (current) – joguya | ||
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| ====== PICRUSt ====== | ====== PICRUSt ====== | ||
| - | PICRUSt | + | PICRUSt is a bioinformatics software package designed to predict metagenome functional content from marker gene (e.g., 16S rRNA) surveys and full genomes. |
| ==== v1.0.0 ==== | ==== v1.0.0 ==== | ||
| Line 88: | Line 88: | ||
| python setup.py install | python setup.py install | ||
| - | - Download | + | - Download hdf5 - already compiled, add lib dir to LD_LIBRARY_PATH. Create module for later use. |
| wget " | wget " | ||
| cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared | cd hdf5-1.8.14-linux-centos6-x86_64-gcc447-shared | ||
| Line 95: | Line 95: | ||
| sudo chown -R joguya: | sudo chown -R joguya: | ||
| cp -r * / | cp -r * / | ||
| - | sudo chown -R joguya:joguya | + | sudo chown -R root:root / |
| - Download & build h5py | - Download & build h5py | ||
picrust-software.1420737806.txt.gz · Last modified: by joguya
