User Tools

Site Tools


picard-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
picard-software [2021/09/05 11:19] aorthpicard-software [2022/11/21 08:01] (current) aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Version: 2.26.1+  * Version: 2.27.5
   * Added: March, 2015   * Added: March, 2015
-  * Updated: September2021+  * Updated: November2022
   * Link: https://github.com/broadinstitute/picard   * Link: https://github.com/broadinstitute/picard
  
 ===== Usage ===== ===== Usage =====
-See versions of picard which are available:+See versions which are available:
 <code>$ module avail picard</code> <code>$ module avail picard</code>
  
-Run picard: +Run picard (not necessary to load the module file)
-<code>$ java -jar /export/apps/picard/2.26.1/picard.jar</code>+<code>$ java -jar /export/apps/picard/2.27.5/picard.jar</code>
  
 **Note:** Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite. **Note:** Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite.
Line 23: Line 23:
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ wget https://github.com/broadinstitute/picard/releases/download/2.26.1/picard.jar +<code>$ cd /tmp 
-$ sudo mkdir -p /export/apps/picard/2.26.1 +$ wget https://github.com/broadinstitute/picard/releases/download/2.27.5/picard.jar 
-$ sudo cp picard.jar /export/apps/picard/2.26.1</code>+$ sudo mkdir -p /export/apps/picard/2.27.5 
 +$ sudo cp picard.jar /export/apps/picard/2.27.5</code>
picard-software.txt · Last modified: 2022/11/21 08:01 by aorth