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--- picard-software [2017/02/05 13:18] – joguya
+++ picard-software [2017/02/06 07:49] – [Installation] joguya
@@ Line 28: / Line 28: @@
 </code>
-I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
+I created a generic ''GenomeAnalysisTK'' wrapper shell script for GATK, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
-/export/apps/picard/2.8.2/picard<code>#!/usr/bin/env bash
+/export/apps/gatk/3.7.0/GenomeAnalysisTK.jar<code>#!/usr/bin/env bash
 readonly PREFIX=$(dirname $0)
-java -jar $PREFIX/picard.jar $*
+java -jar $PREFIX/GenomeAnalysisTK.jar $*
 </code>