Differences

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--- picard-software [2015/06/10 12:58] – [Installation] joguya
+++ picard-software [2017/02/05 13:18] – joguya
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.133
+  * Version: 2.8.2
   * Added: March, 2015
-  * Updated: June, 2015
+  * Updated: February, 2017
   * Link: https://broadinstitute.github.io/picard
@@ Line 15: / Line 15: @@
 Load and run picard:
-<code>$ module load picard/1.133
+<code>$ module load picard/2.8.2
 $ picard</code>
@@ Line 24: / Line 24: @@
 <code>$ cd /tmp
-$ wget https://github.com/broadinstitute/picard/releases/download/1.133/picard-tools-1.133.zip
+$ wget https://github.com/broadinstitute/picard/releases/download/2.8.2/picard-2.8.2.jar
-$ unzip picard-tools-1.133.zip
+$ sudo cp picard-2.8.2.jar /export/apps/picard/2.8.2/
-$ cd picard-tools-1.133
-$ sudo mkdir /export/apps/picard/1.133
-$ sudo cp -rv * /export/apps/picard/1.133
 </code>
-I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather unfriendly.
+I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather user-unfriendly.
-/export/apps/picard/1.133/picard
-<code>#!/usr/bin/env bash
+/export/apps/picard/2.8.2/picard<code>#!/usr/bin/env bash
 readonly PREFIX=$(dirname $0)