picard-software
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picard-software [2015/06/10 12:25] – joguya | picard-software [2022/11/21 08:01] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Version: |
* Added: March, 2015 | * Added: March, 2015 | ||
- | * Updated: | + | * Updated: |
- | * Link: https://broadinstitute.github.io/picard | + | * Link: https:// |
===== Usage ===== | ===== Usage ===== | ||
- | + | See versions which are available: | |
- | See versions | + | |
< | < | ||
- | Load and run picard: | + | Run picard |
- | < | + | < |
- | $ picard</ | + | |
**Note:** Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite. | **Note:** Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite. | ||
+ | |||
+ | **Note:** Picard makes use of temporary storage in ''/ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 24: | Line 24: | ||
< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ unzip picard-tools-1.133.zip | + | $ sudo mkdir -p / |
- | $ cd picard-tools-1.133 | + | $ sudo cp picard.jar |
- | $ sudo mkdir / | + | |
- | $ sudo cp -rv * / | + | |
- | </ | + | |
- | + | ||
- | I created a generic '' | + | |
- | + | ||
- | readonly PREFIX=$(dirname $0) | + | |
- | + | ||
- | java -jar $PREFIX/ | + | |
- | </ | + |
picard-software.txt · Last modified: 2022/11/21 08:01 by aorth