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--- picard-software [2015/03/16 09:00] – created aorth
+++ picard-software [2015/06/09 16:35] – aorth
@@ Line 10: / Line 10: @@
 ===== Usage =====
-=== See versions of picard which are available ===
+See versions of picard which are available:
 <code>$ module avail picard</code>
-=== Load and run picard ===
+Load and run picard:
 <code>$ module load picard/1.129
 $ picard</code>
-=== Note: Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite ===
+**Note:** Picard tools are CPU hungry; please use a minimum of 6 CPUs in your batch job when running tools from this suite.
 ===== Installation ======
@@ Line 28: / Line 28: @@
 $ sudo mkdir -p /export/apps/picard/1.129
 $ sudo cp -rv * /export/apps/picard/1.129</code>
+I created a generic ''picard'' wrapper for picard tools, as it must otherwise be run with ''java -jar ..'' and is rather unfriendly.