Differences

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--- phyml-software [2014/06/12 09:08] – created aorth
+++ phyml-software [2018/09/16 06:56] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 20120412
+  * Version: 3.3.20180621
-  * Added: June, 2014
+  * Added: September, 2018
-  * Link: https://code.google.com/p/phyml/
+  * Link: https://github.com/stephaneguindon/phyml
 ===== Usage =====
-=== See versions of phyml which are available ===
+See versions of phyml which are available:
-<code>module avail phyml</code>
+<code>$ module avail phyml</code>
+Load one version into your environment and run it:
+<code>$ module load phyml/3.3.20180621
+$ phyml</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>https://github.com/stephaneguindon/phyml-downloads/releases/download/stable/phyml-20120412.tar.gz
+<code>$ cd /tmp
-tar xf phyml-20120412.tar.gz -C /tmp/
+$ wget https://github.com/stephaneguindon/phyml/archive/v3.3.20180621.tar.gz
-cd /tmp/phyml-20120412
+$ tar xf v3.3.20180621.tar.gz
-scl enable devtoolset-1.1 bash
+$ cd phyml-3.3.20180621
-./configure --prefix=/export/apps/phyml/20120412
+$ ./configure --enable-phyml --prefix=/export/apps/phyml/3.3.20180621
-make
+$ make
-sudo mkdir -p /export/apps/phyml/20120412
+$ sudo mkdir -p /export/apps/phyml/3.3.20180621
-sudo chown aorth /export/apps/phyml/20120412
+$ sudo chown aorth /export/apps/phyml/3.3.20180621
-make install
+$ make install
-sudo chown -R root:root /export/apps/phyml/20120412
+$ sudo chown -R root:root /export/apps/phyml/3.3.20180621</code>
-sudo cp -r doc/ examples/ /export/apps/phyml/20120412/</code>