pbsuite-software
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pbsuite-software [2017/09/30 06:25] – created aorth | pbsuite-software [2017/09/30 06:35] (current) – [Installation] aorth | ||
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- | Load pbsuite into your environment: | + | Load one version of pbsuite into your environment: |
- | < | + | < |
===== Installation ====== | ===== Installation ====== | ||
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$ pip install networkx==1.7 numpy pyparsing | $ pip install networkx==1.7 numpy pyparsing | ||
$ chmod +x bin/ | $ chmod +x bin/ | ||
+ | # manually edit all short style blasr parameters in pbsuite/ | ||
$ cp -r * / | $ cp -r * / | ||
$ sudo chown -R root:root / | $ sudo chown -R root:root / | ||
Note: the [[https:// | Note: the [[https:// | ||
+ | |||
+ | Also note: PBSuite is very old and uses incompatible command-line options for modern versions of blasr. You need to make sure you're using long-form options like '' |
pbsuite-software.1506752710.txt.gz · Last modified: 2017/09/30 06:25 by aorth