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pbsuite-software [2017/09/30 06:35]
aorth
pbsuite-software [2017/09/30 06:35]
aorth [Installation]
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 Note: the [[https://sourceforge.net/p/pb-jelly/wiki/Home/|PBJelly wiki readme]] says to install networkx 1.1, but then the included readme says to use 1.7. Note: the [[https://sourceforge.net/p/pb-jelly/wiki/Home/|PBJelly wiki readme]] says to install networkx 1.1, but then the included readme says to use 1.7.
  
-Also note: PBSuite is very old and uses incompatible command-line options for modern versions of blasr. You need to make sure you're using long-form options like ''--sa'' and ''--out'' instead of ''-sa'' and ''-out''. See [[this thread|https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/7657e087/]] on the PBSuite discussion board.+Also note: PBSuite is very old and uses incompatible command-line options for modern versions of blasr. You need to make sure you're using long-form options like ''--sa'' and ''--out'' instead of ''-sa'' and ''-out''. See [[https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/7657e087/|https://sourceforge.net/p/pb-jelly/discussion/pbjtiks/thread/7657e087/]] on the PBSuite discussion board.
pbsuite-software.txt · Last modified: 2017/09/30 06:35 by aorth