pasta-software
Differences
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pasta-software [2018/10/21 12:51] – created aorth | pasta-software [2018/10/21 13:01] (current) – aorth | ||
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Load one version into your environment and run it: | Load one version into your environment and run it: | ||
< | < | ||
- | $ run_pasta.py -h</ | + | $ run_pasta.py -i input_fasta [-t starting_tree]</ |
Consult the [[https:// | Consult the [[https:// | ||
Line 22: | Line 22: | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
+ | $ mkdir pasta-code | ||
+ | $ cd pasta-code | ||
+ | $ git clone https:// | ||
+ | $ git clone https:// | ||
+ | $ git clone https:// | ||
+ | $ cd pasta | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown -R aorth / | ||
+ | $ export PYTHONPATH=/ | ||
+ | $ python setup.py develop --prefix=/ | ||
+ | $ cd .. | ||
+ | $ sudo cp -r sate-tools-linux/ | ||
+ | $ sudo chown -R root:root / | ||
+ | # for graphical interface (use on HPC only to avoid installing stupid dependencies on nodes) | ||
+ | $ sudo yum install wxPython.x86_64</ | ||
Note that the Pasta project does not tag their releases, so I've used the git commit hash at the time of installation. | Note that the Pasta project does not tag their releases, so I've used the git commit hash at the time of installation. |
pasta-software.1540126279.txt.gz · Last modified: 2018/10/21 12:51 by aorth