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orp-software [2019/10/25 18:52] – aorthorp-software [2019/10/31 08:45] – aorth
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 <code>$ module load orp/2.2.8 <code>$ module load orp/2.2.8
-$ /export/apps/orp/2.2.8/oyster.mk</code>+$ /export/apps/orp/2.2.8/oyster.mk -h</code>
  
 Read [[https://oyster-river-protocol.readthedocs.io/en/latest/|the documentation]] to see more information about how to run Oyster River Protocol. Read [[https://oyster-river-protocol.readthedocs.io/en/latest/|the documentation]] to see more information about how to run Oyster River Protocol.
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 $ sudo chroot /var/tmp/chroot/orp</code> $ sudo chroot /var/tmp/chroot/orp</code>
  
-Then, after entering the chroot, try to loosely follow the instructions in the Dockerfile and the Makefile until you get the orp virtual environment set activated:+Then, after entering the chroot, try to loosely follow the instructions in the Dockerfile and the Makefile until you get the orp virtual environment activated:
  
 <code># wget https://github.com/macmanes-lab/Oyster_River_Protocol/archive/2.2.8.tar.gz <code># wget https://github.com/macmanes-lab/Oyster_River_Protocol/archive/2.2.8.tar.gz
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 # conda activate orp</code> # conda activate orp</code>
  
-Set up extra bits of data and software from Makefile:+Set up a few extra pieces of software and download some data sets (see the Makefile):
  
 <code># git clone -b 2.0.1 https://github.com/bcgsc/transabyss.git software/transabyss <code># git clone -b 2.0.1 https://github.com/bcgsc/transabyss.git software/transabyss
orp-software.txt · Last modified: 2019/10/31 08:45 by aorth