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nextclade-software [2021/02/15 10:46] aorthnextclade-software [2021/09/06 10:23] aorth
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 ===== Information ===== ===== Information =====
  
-  * Version: 0.12.0+  * Version: 1.3.0
   * Added: February, 2021   * Added: February, 2021
-  * Link: https://github.com/nextstrain/nextclade+  * Updated: September, 2021 
 +  * Link: https://github.com/nextstrain/nextclade/tree/master/packages/nextclade_cli
  
 ===== Usage ===== ===== Usage =====
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load nextclade/0.12.0 +<code>$ module load nextclade/1.3.0 
-$ nextclade.js</code>+$ nextclade</code>
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ sudo yum install rh-nodejs12-nodejs.x86_64 +<code>$ sudo mkdir -p /export/apps/nextclade/1.3.0/bin 
-$ cd /tmp +sudo wget https://github.com/nextstrain/nextclade/releases/download/1.3.0/nextclade-Linux-x86_64 -/export/apps/nextclade/1.3.0/bin/nextclade 
-git clone https://github.com/nextstrain/nextclade.git +$ sudo chmod +x /export/apps/nextclade/1.3.0/bin/nextclade</code>
-$ cd nextclade +
-$ git checkout 0.12.0 +
-$ cd packages/web +
-$ cp .env.example .env +
-$ export PATH=$PATH:/opt/rh/rh-nodejs12/root/usr/bin +
-$ npm config set cache /tmp/aorth-npm +
-$ npm install yarn +
-$ npx yarn cli:prod:build +
-$ sudo mkdir -/export/apps/nextclade/0.12.0/bin +
-$ sudo cp -r ../cli/dist//export/apps/nextclade/0.12.0/bin</code>+
  
-**Note:** nextclade's command line utility is written in JavaScript so we need Node.js to install it. This requires a bit of extra work to make sure that npm doesn't write thousands of packages to its cache on our network-based home directory.+__Note: nextclade was previously distributed as a Javascript program, but it seems to have been ported to C++ and is now a standalone executable.__
nextclade-software.txt · Last modified: 2023/02/23 12:11 by aorth