ILRI Research Computing

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====== netmhcpan ======

NetMHCpan uses Artificial Neural Networks(ANN) to predict peptides bindings to MHC molecules.


===== Information =====

  * Latest Version: 2.8
  * Added: September, 2015
  * Link:  http://www.cbs.dtu.dk/services/NetMHC

===== Usage =====

See versions of netmhcpan which are available:
<code>$ module avail netmhcpan</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>** Request netMHCpan from http://www.cbs.dtu.dk/cgi-bin/nph-sw_request?netMHCpan
tar -xvf netMHCpan-2.8a.Linux.tar.gz
sudo mkdir -p /export/apps/netmhcpan/2.8

- set env. vars in netMHCpan tcsh script
setenv  NMHOME  /export/apps/netmhcpan/2.8/

sudo cp -r netMHCpan-2.8/* /export/apps/netmhcpan/2.8
</code>

===== Running =====
<code>
$ module load netmhcpan/2.8
$ nethmcpan -h
</code>

See [[http://www.cbs.dtu.dk/cgi-bin/nph-runsafe?man=netMHCpan|netmhcpan manual pages]] for a complete documentation of netmhcpan command.