nanopolish-software
Differences
This shows you the differences between two versions of the page.
| nanopolish-software [2018/11/17 22:20] – created aorth | nanopolish-software [2023/02/22 13:36] (current) – aorth | ||
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| Line 4: | Line 4: | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 0.10.2 | + | * Version: 0.14.0 |
| * Added: November, 2018 | * Added: November, 2018 | ||
| + | * Updated: February, 2023 | ||
| * Link: https:// | * Link: https:// | ||
| Line 14: | Line 15: | ||
| Load one version into your environment and run it: | Load one version into your environment and run it: | ||
| - | < | + | < |
| $ nanopolish help</ | $ nanopolish help</ | ||
| Line 23: | Line 24: | ||
| $ git clone --recursive https:// | $ git clone --recursive https:// | ||
| $ cd nanopolish | $ cd nanopolish | ||
| - | $ git checkout v0.10.2 | + | $ git checkout v0.14.0 |
| - | $ make | + | # Load the htslib and minimap2 modules because they provide necessary |
| - | $ sudo mkdir -p / | + | # CPPFLAGS and LDFLAGS for the build |
| - | $ sudo chown -R aorth:aorth / | + | $ module load htslib/ |
| - | $ cp -r bin docs nanopolish | + | $ HTS=noinstall MINIMAP2=noinstall |
| - | $ python3.6m -m venv / | + | $ sudo mkdir -p / |
| - | $ source / | + | $ sudo chown aorth:aorth / |
| - | $ pip3 install | + | $ cp -r bin docs nanopolish |
| - | $ sudo chown -R root:root / | + | $ module load python/3.8 |
| + | $ python3.8 -m venv / | ||
| + | $ source / | ||
| + | $ pip install | ||
| + | $ sudo chown -R root:root / | ||
nanopolish-software.1542493230.txt.gz · Last modified: 2018/11/17 22:20 by aorth