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mpiblast [2010/01/20 12:18] – 172.26.0.166mpiblast [2010/01/20 12:19] – 172.26.0.166
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 The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs. The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs.
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 +==== Number of Jobs ====
  
 https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2005-July/012726.html https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2005-July/012726.html
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 %%With formatdb, the number of nodes refers to compute node number.   %%With formatdb, the number of nodes refers to compute node number.  
 With mpiBLAST, np refers to number of processes, which isn't   With mpiBLAST, np refers to number of processes, which isn't