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mpiblast [2010/01/19 12:51] 172.26.0.166mpiblast [2010/01/19 12:59] 172.26.0.166
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 The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs. The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs.
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 ===== Links ===== ===== Links =====
   * Submitting MPI jobs using SGE: http://www.shef.ac.uk/wrgrid/documents/gridengine.html   * Submitting MPI jobs using SGE: http://www.shef.ac.uk/wrgrid/documents/gridengine.html
   * mpiBLAST Guide: http://www.mpiblast.org/Docs/Guide   * mpiBLAST Guide: http://www.mpiblast.org/Docs/Guide
   * Updating the BLAST databases: http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl   * Updating the BLAST databases: http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl
 +  * Rocks documentation on mpiBLAST: http://www.rocksclusters.org/roll-documentation/bio/5.2/mpiblast_usage.html