Differences

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--- mpiblast [2010/01/19 11:10] – 172.26.0.166
+++ mpiblast [2010/01/19 12:59] – 172.26.0.166
@@ Line 62: / Line 62: @@
 Total Execution Time: 98.3068</code>
-The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs.
+<code>$ time pb blastall -d alan_drosoph -p blastn -i sequences/drosoph.seq -o drosoph.result
+real    3m6.163s
+user    0m0.046s
+sys     0m1.423s</code>
+The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs.
 ===== Links =====
   * Submitting MPI jobs using SGE: http://www.shef.ac.uk/wrgrid/documents/gridengine.html
   * mpiBLAST Guide: http://www.mpiblast.org/Docs/Guide
   * Updating the BLAST databases: http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl
+  * Rocks documentation on mpiBLAST: http://www.rocksclusters.org/roll-documentation/bio/5.2/mpiblast_usage.html