mpiblast
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mpiblast [2010/01/19 06:30] – 172.26.0.166 | mpiblast [2010/01/19 10:09] – 172.26.0.166 | ||
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* **nfrags** specifies how many database fragments you want to split the original database into. This should be equal to how many different nodes you want to run mpiblast on. | * **nfrags** specifies how many database fragments you want to split the original database into. This should be equal to how many different nodes you want to run mpiblast on. | ||
- | http:// | ||
- | ===== Updating BLAST Databases ===== | ||
- | http:// | ||
===== Notes on .ncbirc ==== | ===== Notes on .ncbirc ==== | ||
Notes on setting up the '' | Notes on setting up the '' | ||
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The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs. | The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs. | ||
+ | ===== Links ===== | ||
+ | * Submitting MPI jobs using SGE: http:// | ||
+ | * mpiBLAST Guide: http:// | ||
+ | * Updating the BLAST databases: http:// |