mpiblast
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mpiblast [2010/01/19 06:11] – 172.26.0.166 | mpiblast [2010/01/19 09:17] – 172.26.0.166 | ||
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http:// | http:// | ||
- | ===== Updating BLAST Databases ===== | + | |
- | http:// | + | |
===== Notes on .ncbirc ==== | ===== Notes on .ncbirc ==== | ||
Notes on setting up the '' | Notes on setting up the '' | ||
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< | < | ||
MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.3.2)</ | MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.3.2)</ | ||
- | |||
===== Benchmarks ===== | ===== Benchmarks ===== | ||
< | < | ||
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user 12m13.891s | user 12m13.891s | ||
sys | sys | ||
+ | |||
+ | The number of processes for an MPI job should be +1 of the number of CPUs because one process is used as the master to control the other jobs. | ||
+ | ===== Links ===== | ||
+ | * Submitting MPI jobs using SGE: http:// | ||
+ | |||
+ | < | ||
+ | $ sudo ln -s /scratch/ / | ||
+ | $ sudo chmod 777 /scratch/ | ||
+ | $ sudo chmod o+t / |