mpiblast
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mpiblast [2010/01/18 12:15] – 172.26.0.166 | mpiblast [2010/01/19 06:11] – 172.26.0.166 | ||
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+ | OpenMPI FAQ: http:// | ||
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- | * **--nfrags=10** Specifies | + | * **nfrags** |
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Large databases like nt can consume several gigabytes of disk space and it is preferable to store them in compressed form. Starting with mpiBLAST 1.4.0 it is possible to pipe FastA formatted sequence data into mpiformatdb. This feature provides the ability to directly format a compressed (gzip/bzip etc.) database using command line syntax like: | Large databases like nt can consume several gigabytes of disk space and it is preferable to store them in compressed form. Starting with mpiBLAST 1.4.0 it is possible to pipe FastA formatted sequence data into mpiformatdb. This feature provides the ability to directly format a compressed (gzip/bzip etc.) database using command line syntax like: | ||
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+ | ==== SGE Support ==== | ||
+ | See this FAQ entry: http:// | ||
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+ | MCA ras: gridengine (MCA v2.0, API v2.0, Component v1.3.2)</ | ||
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===== Benchmarks ===== | ===== Benchmarks ===== | ||
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