mpiblast
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revision | Next revisionBoth sides next revision | ||
mpiblast [2010/01/18 12:11] – 172.26.0.166 | mpiblast [2010/01/18 12:15] – 172.26.0.166 | ||
---|---|---|---|
Line 40: | Line 40: | ||
Large databases like nt can consume several gigabytes of disk space and it is preferable to store them in compressed form. Starting with mpiBLAST 1.4.0 it is possible to pipe FastA formatted sequence data into mpiformatdb. This feature provides the ability to directly format a compressed (gzip/bzip etc.) database using command line syntax like: | Large databases like nt can consume several gigabytes of disk space and it is preferable to store them in compressed form. Starting with mpiBLAST 1.4.0 it is possible to pipe FastA formatted sequence data into mpiformatdb. This feature provides the ability to directly format a compressed (gzip/bzip etc.) database using command line syntax like: | ||
< | < | ||
- | |||
- | |||
===== Benchmarks ===== | ===== Benchmarks ===== | ||
- | < | + | < |
| | ||
real 7m48.052s | real 7m48.052s | ||
user 7m40.775s | user 7m40.775s | ||
- | sys | + | sys |
+ | |||
+ | < | ||
+ | Total Execution Time: 395.754 | ||
- | < | + | real 6m36.841s |
+ | user 12m13.891s | ||
+ | sys 0m56.631s</ |