mkatari-bioinformatics-august-2013-loadingphytozome
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mkatari-bioinformatics-august-2013-loadingphytozome [2015/06/18 07:52] – mkatari | mkatari-bioinformatics-august-2013-loadingphytozome [2015/06/18 09:05] (current) – [Run Fisher Exact Test] mkatari | ||
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row.names=1, | row.names=1, | ||
goresults=doFisherTest(as.character(gene.list[, | goresults=doFisherTest(as.character(gene.list[, | ||
- | write.table(goresults, | + | write.table(goresults, |
</ | </ | ||
+ | |||
+ | Visualizing your results in the GO-term graph. Use the RamiGO package. Simply provide the GO terms that are enriched and the corresponding p-value for the go-terms. By default it will save a file to your working directory called RamiGO.png | ||
+ | |||
+ | < | ||
+ | source(" | ||
+ | biocLite(" | ||
+ | library(RamiGO) | ||
+ | getAmigoTree(rownames(gotermresults)[1: | ||
+ | | ||
+ | </ | ||
+ |
mkatari-bioinformatics-august-2013-loadingphytozome.1434613977.txt.gz · Last modified: 2015/06/18 07:52 by mkatari