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mkatari-bioinformatics-august-2013-loadingphytozome [2015/06/18 08:00] – mkatarimkatari-bioinformatics-august-2013-loadingphytozome [2015/06/18 09:05] (current) – [Run Fisher Exact Test] mkatari
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 write.table(goresults, "goresults.xls", col.names=NA, quote=F, sep="\t") write.table(goresults, "goresults.xls", col.names=NA, quote=F, sep="\t")
 </code> </code>
 +
 +Visualizing your results in the GO-term graph. Use the RamiGO package. Simply provide the GO terms that are enriched and the corresponding p-value for the go-terms. By default it will save a file to your working directory called RamiGO.png
 +
 +<code>
 +source("http://bioconductor.org/biocLite.R")
 +biocLite("RamiGO")
 +library(RamiGO)
 +getAmigoTree(rownames(gotermresults)[1:3], c("blue","red","green"),
 +             gotermresults$AdjPval[1:3])
 +</code>
 +
mkatari-bioinformatics-august-2013-loadingphytozome.txt · Last modified: 2015/06/18 09:05 by mkatari