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mkatari-bioinformatics-august-2013-loadingphytozome [2013/12/17 14:46] – mkatarimkatari-bioinformatics-august-2013-loadingphytozome [2013/12/17 14:47] – mkatari
Line 36: Line 36:
 <code> <code>
 source("GoTermEnrichment.R") source("GoTermEnrichment.R")
-goterm_annot<-read.table("goterm_annot", sep="|", strip.white=TRUE, row.names=1, quote="")+goterm_annot<-read.table("goterm_annot", sep="|", strip.white=TRUE,  
 +                          row.names=1, quote="")
 goresults=doFisherTest(gene.list, goAnnot=goterm_annot) goresults=doFisherTest(gene.list, goAnnot=goterm_annot)
 write.table(goresults, "gorestults", quote=F, sep="\t") write.table(goresults, "gorestults", quote=F, sep="\t")
 </code> </code>
mkatari-bioinformatics-august-2013-loadingphytozome.txt · Last modified: 2015/06/18 09:05 by mkatari