mkatari-bioinformatics-august-2013-loadingphytozome
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mkatari-bioinformatics-august-2013-loadingphytozome [2013/08/21 09:34] – mkatari | mkatari-bioinformatics-august-2013-loadingphytozome [2014/05/08 12:10] – mkatari | ||
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===== Run Fisher Exact Test ===== | ===== Run Fisher Exact Test ===== | ||
- | Start by sourcing the [[https:// | + | If you do not have a sample gene list to work with, simply create a random one. |
< | < | ||
Line 31: | Line 31: | ||
</ | </ | ||
- | The function itself is called doFisherTest. It has three arguments: gene.list, gene2go , and go2gene. The last two use gene2go and go2gene as default but different lists can be provided here. | + | Start by sourcing the [[https:// |
To run the function: | To run the function: | ||
< | < | ||
- | goresults=doFisherTest(gene.list) | + | source(" |
+ | goterm_annot< | ||
+ | row.names=1, | ||
+ | goresults=doFisherTest(gene.list, goAnnot=goterm_annot) | ||
+ | write.table(goresults, | ||
</ | </ |
mkatari-bioinformatics-august-2013-loadingphytozome.txt · Last modified: 2015/06/18 09:05 by mkatari