mkatari-bioinformatics-august-2013-igvnotes
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| mkatari-bioinformatics-august-2013-igvnotes [2014/05/21 12:56] – created mkatari | mkatari-bioinformatics-august-2013-igvnotes [2014/05/21 13:45] (current) – mkatari | ||
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| 3) For each sam files, convert to bam file | 3) For each sam files, convert to bam file | ||
| < | < | ||
| - | / | + | samtools view -S -b NDL06-132.sam > NDL06-132.bam |
| </ | </ | ||
| 4) sort each bam file | 4) sort each bam file | ||
| < | < | ||
| - | / | + | samtools sort NDL06-132.bam NDL06-132.bam.sorted |
| </ | </ | ||
| 5) create index for each bam file | 5) create index for each bam file | ||
| < | < | ||
| - | / | + | samtools index NDL06-132.bam.sorted.bam |
| </ | </ | ||
mkatari-bioinformatics-august-2013-igvnotes.1400676989.txt.gz · Last modified: by mkatari