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mkatari-bioinformatics-august-2013-gatknotes [2016/08/17 08:33] mkatarimkatari-bioinformatics-august-2013-gatknotes [2016/08/17 08:37] (current) mkatari
Line 277: Line 277:
     -o PTC_human.gatk.filter.vcf \     -o PTC_human.gatk.filter.vcf \
     --variant PTC_human.gatk.vcf \     --variant PTC_human.gatk.vcf \
-    --filterExpression "QD<2.0||MQ<40.0||FS>60.0||HaplotypeScore >13.0"+    --filterExpression "QD<2.0||MQ<40.0||FS>60.0||HaplotypeScore>13.0"
-    --filterName "mannyfilter"+    --filterName mannyfilter
  
 </code> </code>
mkatari-bioinformatics-august-2013-gatknotes.1471422831.txt.gz · Last modified: 2016/08/17 08:33 by mkatari