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mkatari-bioinformatics-august-2013-gatknotes

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mkatari-bioinformatics-august-2013-gatknotes [2016/08/11 13:54] mkatarimkatari-bioinformatics-august-2013-gatknotes [2016/08/17 08:33] mkatari
Line 277: Line 277:
     -o PTC_human.gatk.filter.vcf \     -o PTC_human.gatk.filter.vcf \
     --variant PTC_human.gatk.vcf \     --variant PTC_human.gatk.vcf \
-    --filterExpression "QD < 2.0 || MQ < 40.0 || FS > 60.0 || HaplotypeScore >13.0" \+    --filterExpression "QD<2.0||MQ<40.0||FS>60.0||HaplotypeScore >13.0" \
     --filterName "mannyfilter"     --filterName "mannyfilter"
  
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari