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mkatari-bioinformatics-august-2013-gatknotes [2016/08/10 20:47] – mkatarimkatari-bioinformatics-august-2013-gatknotes [2016/08/11 12:28] – mkatari
Line 12: Line 12:
 module load bowtie2 module load bowtie2
 module load samtools module load samtools
 +module load picard
  
 bowtie2-build PTC_Human.fasta PTC_Human bowtie2-build PTC_Human.fasta PTC_Human
 samtools faidx PTC_Human.fasta samtools faidx PTC_Human.fasta
-java -jar /export/apps/picard-tools/1.112/CreateSequenceDictionary.jar \+picard CreateSequenceDictionary.jar \
    R=PTC_Human.fasta \    R=PTC_Human.fasta \
    O=PTC_Human.dict    O=PTC_Human.dict
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari