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mkatari-bioinformatics-august-2013-gatknotes [2014/10/09 13:12] – mkatarimkatari-bioinformatics-august-2013-gatknotes [2014/10/09 13:16] – mkatari
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     -o namikonga_albert_filter.vcf \     -o namikonga_albert_filter.vcf \
     --variant /home/emasumba/Namikonga_Albert.gatk.vcf \     --variant /home/emasumba/Namikonga_Albert.gatk.vcf \
-    --filterExpression "QD < 2.0 || MQ < 40.0 || FS > 60.0 || HaplotypeScore >13.0" --filterName "mannyfilter"+    --filterExpression "QD < 2.0 || MQ < 40.0 || FS > 60.0 || HaplotypeScore >13.0" \ 
 +    --filterName "mannyfilter"
  
 </code> </code>
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari