User Tools

Site Tools


mkatari-bioinformatics-august-2013-gatknotes

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revisionBoth sides next revision
mkatari-bioinformatics-august-2013-gatknotes [2014/06/13 07:23] mkatarimkatari-bioinformatics-august-2013-gatknotes [2014/06/13 08:28] mkatari
Line 132: Line 132:
 If you would like to generate a table of from the vcf file use the following command If you would like to generate a table of from the vcf file use the following command
 <code> <code>
-java -jar GenomeAnalysisTK.jar \+java -jar /export/apps/GenomeAnalysisTK/GenomeAnalysisTK-2.3-9-ge5ebf34/GenomeAnalysisTK.jar \
      -R PTC_Human.fasta      -R PTC_Human.fasta
      -T VariantsToTable \      -T VariantsToTable \
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari