mkatari-bioinformatics-august-2013-gatknotes
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revision | Next revisionBoth sides next revision | ||
| mkatari-bioinformatics-august-2013-gatknotes [2014/06/11 13:46] – mkatari | mkatari-bioinformatics-august-2013-gatknotes [2014/06/11 13:46] – mkatari | ||
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| Line 38: | Line 38: | ||
| bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam | bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam | ||
| samtools view -bS Cohen.sam > Cohen.bam | samtools view -bS Cohen.sam > Cohen.bam | ||
| - | /code> | + | </code> |
| The picard method to sort is preferred by GATK | The picard method to sort is preferred by GATK | ||
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari