mkatari-bioinformatics-august-2013-gatknotes
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| mkatari-bioinformatics-august-2013-gatknotes [2014/06/11 12:52] – mkatari | mkatari-bioinformatics-august-2013-gatknotes [2014/06/11 13:36] – mkatari | ||
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| * create a bam index for dedup bam files | * create a bam index for dedup bam files | ||
| * realign samples | * realign samples | ||
| + | |||
| + | Once they are all processed | ||
| * merge all samples to one bam file | * merge all samples to one bam file | ||
| * sort and index this merged bam file | * sort and index this merged bam file | ||
mkatari-bioinformatics-august-2013-gatknotes.txt · Last modified: 2016/08/17 08:37 by mkatari