User Tools

Site Tools


mkatari-bioinformatics-august-2013-deseq

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revisionBoth sides next revision
mkatari-bioinformatics-august-2013-deseq [2015/06/17 06:14] mkatarimkatari-bioinformatics-august-2013-deseq [2015/06/17 06:14] mkatari
Line 108: Line 108:
 </code> </code>
  
-Now the beauty of the script is that a user does not need to start R or even know how to use R to run the script. Simply call the script as any command and the results will be saved in an output directory. This is also great way to build a workflow of several R functions. The command to run the script is shown below. Feel free to put it in your sbatch file. 
  
-<code> 
-/export/apps/R/3.0.0/bin/Rscript /home/mkatari/Rscripts/DESeq.R /home/mkatari/testDeseq/NextGenRaw.txt /home/mkatari/testDeseq/expdesign.txt /home/mkatari/testDeseq/ 
-</code> 
mkatari-bioinformatics-august-2013-deseq.txt · Last modified: 2015/08/21 14:13 by mkatari