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mkatari-bioinformatics-august-2013-clustering [2014/12/15 11:58] – mkatarimkatari-bioinformatics-august-2013-clustering [2014/12/15 12:05] – mkatari
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 <code> <code>
-SigGenes.kmeans.2 = kmeans(t(scaledSigGenes), 2)+SigGenes.kmeans.2 = kmeans(t(scaledSigGenes), 2, nstart=25)
 </code> </code>
  
Line 107: Line 107:
      
   for (i in 2:20) {   for (i in 2:20) {
-     kmeans_tmp=kmeans(x, 2, nstart=25)+     kmeans_tmp=kmeans(x, i, nstart=25)
      kmeans_ss[i] = kmeans_tmp$betweenss/kmeans_tmp$totss          kmeans_ss[i] = kmeans_tmp$betweenss/kmeans_tmp$totss    
          
mkatari-bioinformatics-august-2013-clustering.txt · Last modified: 2015/06/17 13:26 by mkatari