mkatari-bioinformatics-august-2013-clustering
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| Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
| mkatari-bioinformatics-august-2013-clustering [2013/08/29 09:30] – mkatari | mkatari-bioinformatics-august-2013-clustering [2013/10/09 13:31] – mkatari | ||
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| - | Clustering rna-seq data, continuation from [[mkatari-bioinformatics-august-2013-deseq|DESeq]] | + | ====== |
| + | continuation from [[mkatari-bioinformatics-august-2013-deseq|DESeq]] | ||
| Get the significant genes | Get the significant genes | ||
| Line 53: | Line 54: | ||
| </ | </ | ||
| - | Heatmap | + | ====== |
| < | < | ||
| Line 61: | Line 63: | ||
| These functions will make it easy for us to specify how we want the clustering to be performed in the heatmap function | These functions will make it easy for us to specify how we want the clustering to be performed in the heatmap function | ||
| - | </code> | + | < |
| hclust2 <- function(x, method=" | hclust2 <- function(x, method=" | ||
| hclust(x, method=method, | hclust(x, method=method, | ||
| Line 91: | Line 93: | ||
| dev.off() | dev.off() | ||
| </ | </ | ||
| - | |||
mkatari-bioinformatics-august-2013-clustering.txt · Last modified: 2015/06/17 13:26 by mkatari