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mkatari-bioinformatics-august-2013-clustering [2013/08/29 09:29] – created mkatarimkatari-bioinformatics-august-2013-clustering [2013/10/09 13:30] – mkatari
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-Clustering rna-seq data, continuation from [[mkatari-bioinformatics-august-2013-deseq|DESeq]]+====== Clustering rna-seq data, continuation from [[mkatari-bioinformatics-august-2013-deseq|DESeq]] ====== 
  
 Get the significant genes Get the significant genes
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 Calculate silhouette values Calculate silhouette values
 <code> <code>
-sigGenes.hclust.k2.sil<-silhouette(sigGenes.hclust.k2, sigGenes.normalized.dist)+sigGenes.hclust.k2.sil<-silhouette(sigGenes.hclust.k2,  
 +                                   sigGenes.normalized.dist)
 </code> </code>
  
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 </code> </code>
  
-Heatmap+====== Heatmap ====== 
  
 <code> <code>
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 These functions will make it easy for us to specify how we want the clustering to be performed in the heatmap function These functions will make it easy for us to specify how we want the clustering to be performed in the heatmap function
  
-</code>+<code>
 hclust2 <- function(x, method="average", ...) { hclust2 <- function(x, method="average", ...) {
   hclust(x, method=method, ...)   hclust(x, method=method, ...)
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 dev.off() dev.off()
 </code> </code>
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mkatari-bioinformatics-august-2013-clustering.txt · Last modified: 2015/06/17 13:26 by mkatari