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mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:34] mkatarimkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:38] (current) mkatari
Line 76: Line 76:
 #SBATCH -n 8 #SBATCH -n 8
  
-blastn -db cassavaV5 -query scaffold12498.fa -out scaffold12498.cassavaV5_2.bout -num_threads 8 -outfmt 6 -evalue 0.00001+module load blast 
 + 
 +echo "Blast ready to run" 
 + 
 +blastn -db cassavaV5 -query scaffold12498.fa 
 +       -out scaffold12498.cassavaV5_2.bout 
 +       --num_threads 8 -outfmt 6 -evalue 0.00001 
 + 
 +echo "Blast complete" 
 </code> </code>
  
mkatari-bioinformatics-august-2013-blastnotes.1433421290.txt.gz · Last modified: 2015/06/04 12:34 by mkatari