mkatari-bioinformatics-august-2013-blastnotes
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mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:34] – mkatari | mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:38] (current) – mkatari | ||
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#SBATCH -n 8 | #SBATCH -n 8 | ||
- | blastn -db cassavaV5 -query scaffold12498.fa -out scaffold12498.cassavaV5_2.bout -num_threads 8 -outfmt 6 -evalue 0.00001 | + | module load blast |
+ | |||
+ | echo "Blast ready to run" | ||
+ | |||
+ | blastn -db cassavaV5 -query scaffold12498.fa | ||
+ | -out scaffold12498.cassavaV5_2.bout | ||
+ | --num_threads 8 -outfmt 6 -evalue 0.00001 | ||
+ | |||
+ | echo "Blast complete" | ||
</ | </ | ||
mkatari-bioinformatics-august-2013-blastnotes.1433421290.txt.gz · Last modified: 2015/06/04 12:34 by mkatari