mkatari-bioinformatics-august-2013-blastnotes
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mkatari-bioinformatics-august-2013-blastnotes [2014/10/23 19:58] – mkatari | mkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:38] (current) – mkatari | ||
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< | < | ||
module load blast | module load blast | ||
- | which blastx | + | which blastn |
- | / | + | / |
</ | </ | ||
Line 76: | Line 76: | ||
#SBATCH -n 8 | #SBATCH -n 8 | ||
- | / | + | module load blast |
+ | |||
+ | echo "Blast ready to run" | ||
+ | |||
+ | blastn | ||
+ | -out scaffold12498.cassavaV5_2.bout \ | ||
+ | --num_threads 8 -outfmt 6 -evalue 0.00001 | ||
+ | |||
+ | echo "Blast complete" | ||
</ | </ | ||
+ | |||
* Run the sbatch file. As soon as you run the file a job id will be assigned to your submission. | * Run the sbatch file. As soon as you run the file a job id will be assigned to your submission. |
mkatari-bioinformatics-august-2013-blastnotes.1414094320.txt.gz · Last modified: 2014/10/23 19:58 by mkatari