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mkatari-bioinformatics-august-2013-blastnotes [2014/10/23 19:58] – mkatarimkatari-bioinformatics-august-2013-blastnotes [2015/06/04 12:36] – mkatari
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 <code> <code>
 module load blast module load blast
-which blastx # note this will only work if you already have the blast module loaded. +which blastn # note this will only work if you already have the blast module loaded. 
-/export/apps/blast/2.2.28+/bin/blastx+/export/apps/blast/2.2.28+/bin/blastn
 </code> </code>
  
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 #SBATCH -n 8 #SBATCH -n 8
  
-/export/apps/blast/2.2.28+/bin/blastx -db /export/data/bio/ncbi/blast/db/nr -query /home/mkatari/ndl06-132-velvet31/contigs.fa -out /home/mkatari/ndl06-132-velvet31/contigs.fa.nr -num_threads 8 -outfmt 6 -evalue 0.00001+module load blast 
 + 
 +blastn -db cassavaV5 -query scaffold12498.fa \ 
 +       -out scaffold12498.cassavaV5_2.bout \ 
 +       --num_threads 8 -outfmt 6 -evalue 0.00001 
 </code> </code>
 +
  
   * Run the sbatch file. As soon as you run the file a job id will be assigned to your submission.   * Run the sbatch file. As soon as you run the file a job id will be assigned to your submission.
mkatari-bioinformatics-august-2013-blastnotes.txt · Last modified: 2015/06/04 12:38 by mkatari