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mkatari-bioinformatics-august-2013-blastnotes [2013/08/14 11:37] – [Run Blast using sbatch] mkatarimkatari-bioinformatics-august-2013-blastnotes [2013/08/16 18:14] mkatari
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-[[mkatari-bioinformatics-august-2013|Manny'Bioinformaics Workshop]]+[[mkatari-bioinformatics-august-2013|Back to Manny'Bioinformatics Workshop Home]]
  
 ====== Run Blast using sbatch ====== ====== Run Blast using sbatch ======
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 Now to refer to the value saved in the variables we simply put $ infront as shown in the blast command line. Now to refer to the value saved in the variables we simply put $ infront as shown in the blast command line.
 +
 +To execute this sbatch file you would simply provide the name of the input file as shown below.
 +
 +<code>
 +sbatch /home/mkatari/blast.sbatch /home/mkatari/ndl06-132-velvet31/contigs.fa
 +</code>
 +
mkatari-bioinformatics-august-2013-blastnotes.txt · Last modified: 2015/06/04 12:38 by mkatari