mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup
Differences
This shows you the differences between two versions of the page.
| Both sides previous revisionPrevious revision | |||
| mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup [2015/11/18 19:28] – mkatari | mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup [2015/11/18 19:48] (current) – mkatari | ||
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| Line 24: | Line 24: | ||
| bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam | bowtie2 -x PTC_Human -U Cohen.fastq -S Cohen.sam | ||
| samtools view -bS Cohen.sam > Cohen.bam | samtools view -bS Cohen.sam > Cohen.bam | ||
| - | samtools sort | + | samtools sort Cohen.bam Cohen_sorted |
| + | samtools index Cohen_sorted.bam | ||
| </ | </ | ||
mkatari-bioinformatics-august-2013-bioinformatics-august-2013-mpileup.1447874930.txt.gz · Last modified: by mkatari