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mira-software [2014/12/16 09:20] – [v4.0.2] joguyamira-software [2015/03/23 20:25] (current) aorth
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-====== mira ======+====== Mira ======
 MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.
  
-==== v4.0.2 ==== 
   * Version: 4.0.2   * Version: 4.0.2
   * Added: December, 2014   * Added: December, 2014
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   * Show all available versions of mira<code>module avail mira</code>   * Show all available versions of mira<code>module avail mira</code>
   * Load mira module: <code>module load mira/4.0.2</code>   * Load mira module: <code>module load mira/4.0.2</code>
-  * get quick help:<code>mira --help</code> +  * Get quick help:<code>mira --help</code>
  
 === Installation === === Installation ===
-  * mira is already compiled, just download the tarball & copy content to /export/apps<code>wget "http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download" -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2+  * mira is already compiled, just download the tarball & copy content to /export/apps 
 +  * <code>wget "http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download" -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2
 sudo mkdir -p /export/apps/mira/4.0.2 sudo mkdir -p /export/apps/mira/4.0.2
 sudo cp -r /home/joguya/src/mira_4.0.2_linux-gnu_x86_64_static/* /export/apps/mira/4.0.2/</code> sudo cp -r /home/joguya/src/mira_4.0.2_linux-gnu_x86_64_static/* /export/apps/mira/4.0.2/</code>
-  * mira module file<code> 
-#%Module1.0 
-##################################################################### 
-## 
-## mira Modulefile 
-## By James Oguya, j.oguya@cgiar.org 
-## December, 2014 
-## 
- 
-set appname         mira 
-set version         4.0.2 
-set prefix          /export/apps/${appname}/${version} 
-set exec_prefix     ${prefix} 
-set url "http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page" 
-set msg "MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.\nMIRA Official Site: $url\n" 
- 
-module-whatis $msg 
- 
-proc ModulesHelp { } { 
-    puts stderr "$msg" 
-} 
- 
-conflict        mira 
- 
-prepend-path    PATH    ${exec_prefix}/bin 
- 
-# mira depends on repeatmasker, load the repeatmasker module as well 
-if { ![is-loaded staden] } { 
-    module load staden 
-} 
-</code> 
- 
-  * deploy the new module using ansible<code>ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=module</code> 
- 
mira-software.1418721640.txt.gz · Last modified: 2014/12/16 09:20 by joguya