Differences

This shows you the differences between two versions of the page.

--- mira-software [2014/12/16 07:43] – created joguya
+++ mira-software [2015/03/23 20:25] (current) – aorth
@@ Line 1: / Line 1: @@
-====== mira ======
+====== Mira ======
 MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.
-==== v4.0.2 ====
   * Version: 4.0.2
   * Added: December, 2014
@@ Line 10: / Line 9: @@
   * Show all available versions of mira<code>module avail mira</code>
   * Load mira module: <code>module load mira/4.0.2</code>
-  * get quick help:<code>mira --help</code>
+  * Get quick help:<code>mira --help</code>
 === Installation ===
-  * mira is already compiled, just download the tarball & copy content to /export/apps<code>wget "http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download" -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2
+  * mira is already compiled, just download the tarball & copy content to /export/apps
+  * <code>wget "http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2/download" -O mira_4.0.2_linux-gnu_x86_64_static.tar.bz2
 sudo mkdir -p /export/apps/mira/4.0.2
 sudo cp -r /home/joguya/src/mira_4.0.2_linux-gnu_x86_64_static/* /export/apps/mira/4.0.2/</code>
-  * mira module file<code>
-#%Module1.0
-#####################################################################
-##
-## mira Modulefile
-## By James Oguya, j.oguya@cgiar.org
-## December, 2014
-##
-set appname         mira
-set version         4.0.2
-set prefix          /export/apps/${appname}/${version}
-set exec_prefix     ${prefix}
-set url "http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page"
-set msg "MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data.\nMIRA Official Site: $url\n"
-module-whatis $msg
-proc ModulesHelp { } {
-    puts stderr "$msg"
-}
-conflict        mira
-prepend-path    PATH    ${exec_prefix}/bin
-# mira depends on repeatmasker, load the repeatmasker module as well
-if { ![is-loaded staden] } {
-    module load staden
-}
-</code>
-  * deploy the new module using ansible<code>ansible-playbook site.yml -u joguya -K -s --limit=compute --tags=module</code>