ILRI Research Computing

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== MinPath ======
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.

===== Information =====

  * Latest version: 1.2
  * Added: July, 2017
  * Link: http://omics.informatics.indiana.edu/MinPath/

===== Usage =====

See versions of MinPath which are available:
<code>$ module avail MinPath</code>

Load MinPath into your environment and run it:
<code>$ module load MinPath/1.2
$ MinPath1.2.py</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget 'http://omics.informatics.indiana.edu/mg/get.php?justdoit=yes&software=minpath1.2.tar.gz' -O minpath1.2.tar.gz
$ tar xf minpath1.2.tar.gz
$ cd MinPath
$ find . -type f -exec chmod 644 {} \;
$ find . -type d -exec chmod 755 {} \;
$ find . -type f -iname "*.py" -exec chmod 755 {} \;
$ sudo mkdir -p /export/apps/MinPath/1.2
$ sudo cp -r * /export/apps/MinPath/1.2</code>