ILRI Research Computing

User Tools

Site Tools

You are here: start » metaphlan-software
metaphlan-software

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Last revisionBoth sides next revision
metaphlan-software [2021/08/29 08:06] – created aorthmetaphlan-software [2021/08/29 08:12] – aorth
Line 17: Line 17:
 **Note:** Please specify the number of CPU (processors) to use when you run metaphlan. For example: **Note:** Please specify the number of CPU (processors) to use when you run metaphlan. For example:
  
-<code>metaphlan metagenome.fastq --input_type fastq --nproc 4 -o /var/scratch/profiled_metagenome.txt</code>+<code>$ metaphlan metagenome.fastq --input_type fastq --nproc 4 -o /var/scratch/profiled_metagenome.txt</code>
  
 The number of CPUs requested with the ''--nproc'' option should be the same as the number requested in your SBATCH, ie ''#SBATCH -n 4''. The number of CPUs requested with the ''--nproc'' option should be the same as the number requested in your SBATCH, ie ''#SBATCH -n 4''.
metaphlan-software.txt · Last modified: 2023/07/19 08:36 by aorth