ILRI Research Computing

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====== Merqury ======

Often, genome assembly projects have illumina whole genome sequencing reads available for the assembled individual.

The k-mer spectrum of this read set can be used for independently evaluating assembly quality without the need of a high quality reference.

Merqury provides a set of tools for this purpose.

===== Information =====

  * Version: 1.3
  * Added: August, 2024
  * Link: https://github.com/marbl/merqury
  
===== Usage =====

See which versions are available:
<code>$ module avail merqury</code>

Load one version into your environment and run it:
<code>$ module load merqury
$ merqury.sh</code>

See: https://github.com/marbl/merqury?tab=readme-ov-file#run

===== Installation ======

Notes from the sysadmin during installation:

<code>$ cd /tmp
$ git clone https://github.com/marbl/merqury.git -b v1.3
$ sudo mkdir /export/apps/merqury
$ sudo cp -r merqury /export/apps/merqury/1.3</code>